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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacaatatactcttttcaagcacttgtttccaagttgtctcctagatgattttgaacttgttattaactgttttaacttatttgtgtctcaaatgactggtttatttgttcctctattaaaatctttcattttgcggtttactctatgcagCTGGAATCGTTATTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAATTCCGGTTCATCTCCAAAGACTACAGTA

Basic information

species Arabidopsis thaliana
transcript AT1G61250.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125048205|gb|EL120474.1|EL120474
EST:     GACCTCAAACGGAAAGAAGATGCTGCTGCACGAG                         CTGGAATCGTTATTGAAGTGAAAAACTGGCCGCCTTTCT
genomic: GACCTCAAACGGAAAGAAGATGCTGCTGCACGAGgtactacaat ... ctctatgcagCTGGAATCGTTATTGAAGTGAAAAACTGGCCGCCTTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggtttatttgttcctctattaaaatctttcattttgcggtttactctatgcagCTGGAATCGTTATTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAATTCCGGTTCATCTCCAAAGACTACAGTA
                                         tttactct  CT-rich tract
                tctattaaaatctttc  TA-rich tract