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...ttattggtgccacagtacttaggtcatctgatgggttgcaatcctgattatttatattgttactaaaacaaattattttgctcttcaaatttaaatgcagAACATCATTGGCATACCGCTAAATCTTGATGTGCCCAAATTGTTGCATGTACTGTATATGGATAAAGTCAACTACTATGCAG
species | Arabidopsis thaliana |
transcript | AT1G60995.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTTAGAAAAATATGG AACATCATTGGCATACCGCTAAATCTTGATGTGCCCAAATTGTTGCEST: gi|86069843|gb|DR365600.1|DR365600
genomic: TCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTTAGAAAAATATGGgtgagttatc ... ttaaatgcagAACATCATTGGCATACCGCTAAATCTTGATGTGCCCAAATTGTTGC
EST: TCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTTAGAAAAATATGG AACATCATTGGCATACCGCEST: gi|86069842|gb|DR365599.1|DR365599
genomic: TCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTTAGAAAAATATGGgtgagttatc ... ttaaatgcagAACATCATTGGCATACCGC
EST: TCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTTAGAAAAATATGG AACATCATTGGCATACCGCTAAAT
genomic: TCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTTAGAAAAATATGGgtgagttatc ... ttaaatgcagAACATCATTGGCATACCGCTAAAT
gattatttatattgttactaaaacaaattattttgctcttcaaatttaaatgcagAACATCATTGGCATACCGCTAAATCTTGATGTGCCCAAATTGTTGCATGTACTGTATATGGATAAAGTCAACTACTATGCAG
tactaaa putative branch site (score: 1)
tttatattgttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattggtgccacagtacttaggtcatctgatgggttgcaatcctgattatttatattgttactaaaacaaattattttgctcttcaaatttaaatgcagAACATCATTGGCATACCGCTAAATCTTGATGTGCCCAAATTGTTGCATGTACTGTATATGGATAAAGTCAACTACTATGCAG
- - - - - - - - - - - - - - - - - - -gcaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaac