1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtagtttttatataaaaaaatgtctcatgtaatcagatatacgcatgaaatccgacaagaataataaaatctaaggattgtatttgaaaatttgggcagGTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAAACACAAAGGAGAGTCCATGGAGGCTATGCACAGTAACACAAGTAGAGCAAGTAAAAACCCTA
species | Arabidopsis thaliana |
transcript | AT1G59740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAAACGACGTCGTACCCTCCTCCACTTTACCACACACTCCTCGTTTCAG GTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAAACACAAAGGAGAG
genomic: GCAAACGACGTCGTACCCTCCTCCACTTTACCACACACTCCTCGTTTCAGgtcatagtca ... atttgggcagGTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAAACACAAAGGAGAG
atgaaatccgacaagaataataaaatctaaggattgtatttgaaaatttgggcagGTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAAACACAAAGGAGAGTCCATGGAGGCTATGCACAGTAACACAAGTAGAGCAAGTAAAAACCCTA
aataataaaatctaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagtttttatataaaaaaatgtctcatgtaatcagatatacgcatgaaatccgacaagaataataaaatctaaggattgtatttgaaaatttgggcagGTTCTTGGACAAGGCATGCATCAAAATCCAAGACACAAACACAAAGGAGAGTCCATGGAGGCTATGCACAGTAACACAAGTAGAGCAAGTAAAAACCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - aaaaaaa
- - - - - - - - - - - - - - - -aatcaga
- - - - - - - - - - - - - - - - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa