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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatggtcatagaaactgtgtgtctagattgttagtgagacgtactgattcttatacaactgtttttaattttgattgacagACAGTCAGTTACATAGCAGAACACGTAGTCGGGACTGGTTCATTCGGAATGGTTTTCCAA

Basic information

species Arabidopsis thaliana
transcript AT1G57870.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116396564|gb|EG439156.1|EG439156
EST:     GCCATGTGATCACAACTACACTCCCTGGACGAAATGGTCAATCAAGACAG                         ACAGTCAGTTACATAGCAGAACACGTAGTCGGGACTGGTTCATTCGGAATG
genomic: GCCATGTGATCACAACTACACTCCCTGGACGAAATGGTCAATCAAGACAGgttagatggt ... tgattgacagACAGTCAGTTACATAGCAGAACACGTAGTCGGGACTGGTTCATTCGGAATG
EST: gi|86072753|gb|DR368510.1|DR368510
EST:     GCCATGTGATCAGAACTACACTCCCTGGACGAAATGGTCAATCAAGACAG                         ACAGTCAGTTACATAGCAGAAC
genomic: GCCATGTGATCACAACTACACTCCCTGGACGAAATGGTCAATCAAGACAGgttagatggt ... tgattgacagACAGTCAGTTACATAGCAGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttagtgagacgtactgattcttatacaactgtttttaattttgattgacagACAGTCAGTTACATAGCAGAACACGTAGTCGGGACTGGTTCATTCGGAATGGTTTTCCAA
                        ttatacaactgttttt  TA-rich tract