1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgaatttttttcttgcattgatgcaaaaccaaatctgatttatcgtctcgaggttttgattttgatcctttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG
species | Arabidopsis thaliana |
transcript | AT1G56340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGAEST: gi|164216767|gb|ES108381.1|ES108381
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGA
EST: CCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAAGAAGATGGTGAGEST: gi|164133920|gb|ES014992.1|ES014992
genomic: CCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAG
EST: AGATTCCAGACACTGACGCAAAGAAG CCTTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATEST: gi|86070963|gb|DR366720.1|DR366720
genomic: AGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCC-TGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCAT
EST: NNGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAEST: gi|116465699|gb|EG508291.1|EG508291
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGA
EST: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTEST: gi|116471772|gb|EG514364.1|EG514364
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATT
EST: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTEST: gi|116465718|gb|EG508310.1|EG508310
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATT
EST: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTEST: gi|116465735|gb|EG508327.1|EG508327
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATT
EST: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTEST: gi|116482410|gb|EG525002.1|EG525002
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATT
EST: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTEST: gi|124785487|gb|EH875166.1|EH875166
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATT
EST: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGNTGAAGAAGATGGTGAGTGGACTGEST: gi|164224656|gb|EL998332.1|EL998332
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTG
EST: GACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTEST: gi|124836770|gb|EH921209.1|EH921209
genomic: GACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATT
EST: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGEST: gi|116465734|gb|EG508326.1|EG508326
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTG
EST: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAG CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATT
genomic: CGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGgtttgaattt ... ttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATT
aaaaccaaatctgatttatcgtctcgaggttttgattttgatcctttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG
ttttgat putative branch site (score: 4)
tcctttgttt CT-rich tract
ttttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaatttttttcttgcattgatgcaaaaccaaatctgatttatcgtctcgaggttttgattttgatcctttgtttatagCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG