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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaaattagttatcattagcaaagacttgacagacagaatatgctcacatgataaaagaaatagtctgatttatgttgacttactatgcatctagGTCAGACCAGTGGCGTGGCTTTCCTTGATATTATATCCTGTTGGAAGAGTAGTAACATATCTTTCGATGGGAATTCTGAAAATTCTTGGTTTGAAAGGAC

Basic information

species Arabidopsis thaliana
transcript AT1G55930.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55930.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA14G01920.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------gtaagtttaaattagttatcattagcaaagacttgacagacagaatatgctcacatgataa---------aagaaatagtctgatttatgttgac-----ttactatgcatctagGTCAGACCAGTGGCGTGGCTTTCCTTGATATTATATCCTGTTGGAAGAGTAGTAACATATCTTTCGATGGGAATTCTGAAAATTCTTGGTTTGAAAGGAC
                                                   |    |    |||||| ||  ||    |    || ||  |      ||  | ||||||||          ||    |  | | |   || ||||      |    |||| | |||||||| |||||||| |||||||||||| | || || ||||| |||||| | || || |||||||| ||||| || |||||| | |||||  | |||||| 
gtaagttgtaaatttcttgcctgttcttttataatatttaggaacagaaatgatgctgctgattagtcatttttgtttattttttcacgcatcattcatatttacatgatatttctgcctcaacttcttttgtaacaaatattgatattgatcctaatgcctgtagGTCAGGCCAGTGGCATGGCTTTCCTTGGTGTTGTACCCTGTAGGAAGAATTGTTACCTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAA

upper sequence: AT1G55930.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------------------------------gtaagtttaaattagttatcattagcaaagacttgacagacagaatatgctcacatgataaa--agaaatagt-----ctgatttatgttgactta------ctatgcatctagGTCAGACCAGTGGCGTGGCTTTCCTTGATATTATATCCTGTTGGAAGAGTAGTAACATATCTTTCGATGGGAATTCTGAAAATTCTTGGTTTGAAAGGAC
                                                              || |    | ||| ||| |||    || |   ||   ||    |   |  |||  |  | |    | |  | |     |  |||||| |||||| |      | |||| |||||||||| ||||||||||||||||| || |||||||||||||| ||||| || || || ||| | || |||||||| || ||||| ||||||||||||||| 
gtaagtttagatagtgctttgtgaaattgaaccacagttcacaattgaaatgctgatcagatgttaaaaaatattggttttcaagttcacattttttctagttgcacggttttcatgtagtgagttggcatcactgcttccaaatttat-ttgactaatgatttccatgcttctagGTCAGGCCAGTGGCGTGGCTTTCGTTTATATTATATCCTGTGGGAAGGGTTGTCACGTATTTATCAATGGGAATGCTAAAAATGCTTGGTTTGAAAGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctcacatgataaaagaaatagtctgatttatgttgacttactatgcatctagGTCAGACCAGTGGCGTGGCTTTCCTTGATATTATATCCTGTTGGAAGAGTAGTAACATATCTTTCGATGGGAATTCTGAAAATTCTTGGTTTGAAAGGAC
                                     gacttac  putative branch site (score: 2)
        atgataaaagaaata  TA-rich tract