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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatcatccttctgctcgtttttcctattttaatgttcttaaggagtttattagaaatctgaaagtcgaaatgctcgtttctcatcaatactttacttctctagACTATAGGTCAAGCCTATGAAGACATGCAGACACAGAACCAACATTTGTTGCAGCAGGTGGCTGAGCGGGACGATTATAATATCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G55250.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55250.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G43490.1 (Glycine max), 3'ss of exon 15
gtacaatcatccttctgctcgtttttcctattttaatgttcttaaggagtttattagaaatctgaaagtcgaaatgctcgtttctcatcaatactttacttctctagACTATAGGTCAAGCCTATGAAGACATGCAGACACAGAACCAACATTTGTTGCAGCAGGTGGCTGAGCGGGACGATTATAATATCAAG
      |   |  ||||    ||| | |   || | |  |||||      |||||     |||   | |  || |  | |      |||  |  | | |      ||||||| |||||||| |||||||| |||||||||||||||||| || ||||| | ||||||   ||| |||| || |||||||| |||
-----gtttgctatctgactttttcttccccttca-tactcttact---cttatt-----tcttgtaatataattatttg------atcgcttttatgc------agACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATCGAGAGGGATGACTATAATATTAAG

upper sequence: AT1G55250.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA14G05490.1 (Glycine max), 3'ss of exon 4
gtacaatcatccttctgctcgtttttcctattttaatgttcttaaggagtttattagaaatctgaaagtcgaaatgctcgtttctcatcaatactttacttc--tctagACTATAGGTCAAGCCTATGAAGACATGCAGACACAGAACCAACATTTGTTGCAGCAGGTGGCTGAGCGGGACGATTATAATATCAAG
                       | | |||| | | | ||  |          ||   | |||  || ||  | | || ||     |   ||   || |||   |  ||||||| |||||||| |||||||| |||||||||||||||||| || ||||| | ||||||   ||| |||| || |||||||| |||
----------------------gtatgctatctgactttttctt-----ccccttcatactct--aactcttatttcttgtaatataattattgattgctttggtgcagACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGAACCAGGTGATCGAGAGGGATGACTATAATATTAAG

upper sequence: AT1G55250.4 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv06s0004g00950.t01 (Vitis vinifera), 3'ss of exon 14
-------------gtacaatcatccttct---gctcgtttttcctattttaatgttcttaaggagtttattagaaatctgaaagtcgaaatgctcgtttctcatcaatactttacttctctagACTATAGGTCAAGCCTATGAAGACATGCAGACACAGAACCAACATTTGTTGCAGCAGGTGGCTGAGCGGGACGATTATAATATCAAG
              | |||   | ||| |   ||  ||||    | ||||  |  ||       |||  ||      ||     | |     ||  ||  |  |  ||  |||  | || |||||||| |||||||| |||||||| ||||||||||| ||||||||| || ||||||||||| ||||| |||| ||||| |||||||||
gtctcctaataatatgcaaattttcttttctggccagtttccattgttttcttcctcccttcctgttcctttctt-ccttttgttggtttcactaattgattttttatttttt-ttcctttagACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTGCAGCAGGTGACTGAGAGGGATGATTACAATATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagaaatctgaaagtcgaaatgctcgtttctcatcaatactttacttctctagACTATAGGTCAAGCCTATGAAGACATGCAGACACAGAACCAACATTTGTTGCAGCAGGTGGCTGAGCGGGACGATTATAATATCAAG
                                       tactttacttctct  CT-rich tract
                                     aatacttta  TA-rich tract