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gtatgtactcctttcttgcagatgggattgggttttatgttcacatgaatgcaacaacataagactacttggtgttttgacattattattctttcgtcattggtctatttgttagGACCTTCCTCTATCCAGCGATAGCGTCTCAGATTCTGTTCAGTGCGAGAAACCTTTAGAGCTGTTGACAGACTCTCTGATATCACAGTTTTATAATGTTG
species | Arabidopsis thaliana |
transcript | AT1G54170.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAAGCTACTCAAAATCCCTGCTGACGAACTTGTGCAAGTTATAGCTAAG GACCTTCCTCTATCCAGCGATAGCGTCTCAGATTCTGTTCAGTGCGAGAAAEST: gi|124846570|gb|EH931007.1|EH931007
genomic: CAAAGCTACTCAAAATCCCTGCTGACGAACTTGTGCAAGTTATAGCTAAGgtatgtactc ... tatttgttagGACCTTCCTCTATCCAGCGATAGCGTCTCAGATTCTGTTCAGTGCGAGAAA
EST: CAAAGCTACTCAAAATCCCTGCTGACGAACTTGTGCAAGTTATAGCTAAG GACCTTCCTCTATCCAGC
genomic: CAAAGCTACTCAAAATCCCTGCTGACGAACTTGTGCAAGTTATAGCTAAGgtatgtactc ... tatttgttagGACCTTCCTCTATCCAGC
aagactacttggtgttttgacattattattctttcgtcattggtctatttgttagGACCTTCCTCTATCCAGCGATAGCGTCTCAGATTCTGTTCAGTGCGAGAAACCTTTAGAGCTGTTGACAGACTCTCTGATATCACAGTTTTATAATGTTG
ttttgac putative branch site (score: 3)
tctattt putative PPT
ttttgacattattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtactcctttcttgcagatgggattgggttttatgttcacatgaatgcaacaacataagactacttggtgttttgacattattattctttcgtcattggtctatttgttagGACCTTCCTCTATCCAGCGATAGCGTCTCAGATTCTGTTCAGTGCGAGAAACCTTTAGAGCTGTTGACAGACTCTCTGATATCACAGTTTTATAATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT