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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactaaacttggtatttacatatatgtaagagatcgatctataggttacctttaagaacattttgtgttatgtttgttaatttttagGGTTCAAGGAAGGGAAGAAGGCATGTTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACAGAATAGGACCGTCGCAAGGTTACGGCCTATG

Basic information

species Arabidopsis thaliana
transcript AT1G53990.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgatctataggttacctttaagaacattttgtgttatgtttgttaatttttagGGTTCAAGGAAGGGAAGAAGGCATGTTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACAGAATAGGACCGTCGCAAGGTTACGGCCTATG
                                          tgttaat  putative branch site (score: 3)
                                                ttttt  CT-rich tract
                           attttgtgttatgttt  TA-rich tract