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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctttcttcgattcaatagttttttgctctgaccctgcaagaactcgtatttaccttttccgtttgtatgttttgttttgttcagCTTGTCCGGTATGCTACCTACCTCCAGAAGAGGCCTTAGCACATATGCCAAAGTATCCATTTGAATCTCCCTTGCTCAAGAATTTGACATATATACGTGA

Basic information

species Arabidopsis thaliana
transcript AT1G53040.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876982|gb|AU237813.1|AU237813
EST:     TTCTTTTCCTCCTCCTCCACCACCTGGAATGAGAAGGCCTGGTC-ACCCC                         CTTGTCCGGNATGCTACCTACCTCCAGAAGA
genomic: TTCTTTTCCTCCTCCTCCACCACCTGGAATGAGAAGGCCTGGTCCACGCCgtaagctctt ... ttttgttcagCTTGTCCGGTATGCTACCTACCTCCAGAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccctgcaagaactcgtatttaccttttccgtttgtatgttttgttttgttcagCTTGTCCGGTATGCTACCTACCTCCAGAAGAGGCCTTAGCACATATGCCAAAGTATCCATTTGAATCTCCCTTGCTCAAGAATTTGACATATATACGTGA
 ctctgac  putative branch site (score: 3)
                                        ttttgtttt  putative PPT
                                        ttttgtttt  TA-rich tract