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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtccactttaccttgtaatcgtttttctgatatgggatttggatcattttggttatatgttgttgttgcatgctgtggattacagAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTATCCACTGAGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G51690.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51690.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA07G01440.1 (Glycine max), 3'ss of exon 2
---------------gtatgtccactttaccttgtaatcgtt-tttctgatatgggatttgga----tcattt--------tggttatatgttgttgttgcatgctgtggattacagAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTATCC-ACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAG
                  |   || |||   || |||      || || |  | || |||  |      | ||        |  || | |  | |   || || ||||   || |||      ||| | ||||| ||  | ||       || ||| | | |   || ||||| ||||| ||||||||||||||||||||||||||||| ||||||
gtaagtctaattttttcttcagcaatttcttttataactaaaattactaacttaggttttaaagattctactttacacccttaattttctaatatctatgtatactgtaacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G20830.1 (Glycine max), 3'ss of exon 2
-------------------------------gtatgtccactttaccttgtaatcgtttttctgatatgggatttggatcattttggttatatgttgttgttgcatgctgtggattacagAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTAT-CCACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAG
                                |||  | |   |  ||     |    |||   | ||   ||||    |  ||   || | |  | |   || || ||||   || |||    | ||| | ||||| ||  | ||       || ||| | | |   || ||||| ||||| ||||||||||||||||||||||||||||| ||||||
gtaattctgattttttcttcagcaatttcttttataactaaaattactaaacttaaggtttgaaagattccattttacacccttaatttctctaatatctatgtatactgtaacttgcagCATTGCGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAG

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA15G02640.1 (Glycine max), 3'ss of exon 2
gtatgtccacttt--acct-tgtaatcgtttttctg----atatgggatttggatcattt--tggttatatgtt----gttgttgcatg--------ctgtggattacagAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTAT-CCACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAG
||| | | | |||   | | || ||  |||||| ||    | |    |     ||   ||  | |||||    |     ||||  ||||        |||     | |||    ||||| | ||||| ||  | ||       || ||| | | ||  |||||||| ||||| ||||| ||||||||||||||||||||||| || |||
gtaagactattttttgcttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttgttatgcacttaatattgtaacatgtatgttttctgaaacatgcagCATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCAGAG

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA13G42800.1 (Glycine max), 3'ss of exon 2
gtatgtcca--ctttacct-tgtaatcgtttttctg--------------atatgggatttggatcat---tttggttatatgttgttgttgcatgctgtggattacagAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTAT-CCACTG--AGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAG
||| | |     ||| | | || ||  |||||| ||              | |  |  |     | ||    ||  || | |    |   ||  |||||     | |||    ||||| | || || ||  | ||    |  || ||| | | ||  |||||||| ||||| ||||| |||||||||||||||||||| || || |||
gtaagactgatttttgcttatgcaagtgtttttgtgtcaaaaaaacaaacaaacagattccttgttatgcacttaattttgtaacatgtatgtttgctgaaacatgcagCATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCAGAG

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------------gtatgtccactttaccttgtaatcgtttttctgatatgggatttggatcattttggttatatgttgttgttgcatgctgtggattacagAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTATCCACTGAGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAG
                               || | |  |    | ||||  || | ||  || |     | | | | |  |||   |  |||| | |  ||  |  ||||    |  ||    | ||| | ||||| || |||||       || || ||| | |||||||| || |||||||||||||| ||||||||||| ||||| ||||||
gtgcgttcttttttaacactactggtctttagtttctgtatccaaacttg--ataggttgccttact---gttcttgtttctttcaatattatgatatctttatacactgtaatgtgtagCATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATTAGGCATCCCGAATTTCGTTATAAAACTGAGTTTCAGAGCCATGAACCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgggatttggatcattttggttatatgttgttgttgcatgctgtggattacagAGCAGTGGAACCAGAAGAGAGCTTGAAGAAGCTGATTATCCACTGAGGCATCCAGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAG
                      ttatatgtt  TA-rich tract