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gtaataatatcgctgaattcatgggtagtgactcactttgtatacattttcaagatttcaacttaaaccttattgtttgtgaattgtcagGCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCGTTCTGGGGTCTTTCCTCAGCTGCAGCAAGTGAAATATGATTGTAACAAG
species | Arabidopsis thaliana |
transcript | AT1G44900.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTCGGAACATCAG GCTAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCEST: gi|116375881|gb|EG418473.1|EG418473
genomic: GATTCGGAACATCAGgtaataatat ... gaattgtcagGC-AGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGC
EST: TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAG GCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCGEST: gi|116375882|gb|EG418474.1|EG418474
genomic: TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAGgtaataatat ... gaattgtcagGCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCG
EST: TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAG GCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCGEST: gi|163980351|gb|ES161484.1|ES161484
genomic: TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAGgtaataatat ... gaattgtcagGCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCG
EST: TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAG GCAGATTCATCTTAACACGATGATCCGTA
genomic: TATGTTCGTGTTACCAACCTACCAGTTAATGATCAGATTCGGAACATCAGgtaataatat ... gaattgtcagGCAGATTCATCTTAACACGATGATCCGTA
ctttgtatacattttcaagatttcaacttaaaccttattgtttgtgaattgtcagGCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCGTTCTGGGGTCTTTCCTCAGCTGCAGCAAGTGAAATATGATTGTAACAAG
tatacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatatcgctgaattcatgggtagtgactcactttgtatacattttcaagatttcaacttaaaccttattgtttgtgaattgtcagGCAGATTCATCTTAACACGATGATCCGTATCGGTGGAGTTGTCACTAGGCGTTCTGGGGTCTTTCCTCAGCTGCAGCAAGTGAAATATGATTGTAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG