1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcttattaactcgacttaatgtgtttcctttcaaatatcaacatgtgacatttcccgctattgtgtggttagGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCACACCGGTTGTTCTAGAGCTTGGAGGAAAATCTCCTGTCGTTGTAGACTC
species | Arabidopsis thaliana |
transcript | AT1G44170.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTACACAG GTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCAEST: gi|116465913|gb|EG508505.1|EG508505
genomic: CGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTACACAGgttcttatta ... gtgtggttagGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCA
EST: CGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTACACAG GTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCAEST: gi|116465916|gb|EG508508.1|EG508508
genomic: CGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTACACAGgttcttatta ... gtgtggttagGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCA
EST: CGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTACACAG GTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCAEST: gi|116465923|gb|EG508515.1|EG508515
genomic: CGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTACACAGgttcttatta ... gtgtggttagGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCA
EST: CGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTACACAG GTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCA
genomic: CGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTACACAGgttcttatta ... gtgtggttagGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCA
aatgtgtttcctttcaaatatcaacatgtgacatttcccgctattgtgtggttagGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCACACCGGTTGTTCTAGAGCTTGGAGGAAAATCTCCTGTCGTTGTAGACTC
acttaat putative branch site (score: 4)
tttcaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttattaactcgacttaatgtgtttcctttcaaatatcaacatgtgacatttcccgctattgtgtggttagGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCACACCGGTTGTTCTAGAGCTTGGAGGAAAATCTCCTGTCGTTGTAGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA