Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagttatttcatttgctttagatgatatgtagagtcacaaaagatcactataacttatagtacatttgtttaaaaagGTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGATGCCTGATTCTATACCCGAGTGGGTTTTCGACTTCATGCCTCTCCGTGGA

Basic information

species Arabidopsis thaliana
transcript AT1G35580.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124887129|gb|EH966031.1|EH966031
EST:     CTTGATCATCAGAACCTCAATGACATTTACAG                         GTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAT
genomic: CTTGATCATCAGAACCTCAATGACATTTACAGgtatagttat ... gtttaaaaagGTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAT
EST: gi|124824609|gb|EH909475.1|EH909475
EST:     TGCGCAATTACTTCTGGCTTGATCATCAGAACCTCAATGACATTTACAG                         GTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAAT
genomic: TGCGCAATTACTTCTGGCTTGATCATCAGAACCTCAATGACATTTACAGgtatagttat ... gtttaaaaagGTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAAT
EST: gi|124810778|gb|EH895644.1|EH895644
EST:     TGACATTTACAG                         GTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAT
genomic: TGACATTTACAGgtatagttat ... gtttaaaaagGTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAT
EST: gi|124784960|gb|EH874639.1|EH874639
EST:     CTTGATCATCAGAACCTCAATGACATTTACAG                         GTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAT
genomic: CTTGATCATCAGAACCTCAATGACATTTACAGgtatagttat ... gtttaaaaagGTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAT
EST: gi|125129375|gb|EL173182.1|EL173182
EST:     ATCAGAACCTCAATGACATTTACAG                         GTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAT
genomic: ATCAGAACCTCAATGACATTTACAGgtatagttat ... gtttaaaaagGTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAT
EST: gi|124913116|gb|EH986990.1|EH986990
EST:     CAATTACTTCTGGCTTGATCATCAAGAACCTCAATGACATTTACAG                         GTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAA
genomic: CAATTACTTCTGGCTTGATCATC-AGAACCTCAATGACATTTACAGgtatagttat ... gtttaaaaagGTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAA
EST: gi|125041871|gb|EL114140.1|EL114140
EST:     CTTCTGGCTTGATCATCAGAACCTCAATGACATTTACAG                         GTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAG
genomic: CTTCTGGCTTGATCATCAGAACCTCAATGACATTTACAGgtatagttat ... gtttaaaaagGTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatgtagagtcacaaaagatcactataacttatagtacatttgtttaaaaagGTTCAAGACTGAGGAATACTCTCACACGGCGGTGAACAAGTTCAATGTGATGCCTGATTCTATACCCGAGTGGGTTTTCGACTTCATGCCTCTCCGTGGA
                         ctataac  putative branch site (score: 3)
                                          tttgttt  putative PPT
                          tataacttatagtaca  TA-rich tract