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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatttcattttctcggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGAC

Basic information

species Arabidopsis thaliana
transcript AT1G32790.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124981533|gb|EL054396.1|EL054396
EST:     TGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAG                         AGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGA
genomic: TGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttc ... ttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGA
EST: gi|86081011|gb|DR376768.1|DR376768
EST:     TCACTGATGAAG                         A-GGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
genomic: TCACTGATGAAGgtattatttc ... ttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
EST: gi|86051671|gb|DR347426.1|DR347426
EST:     TGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAG                         AGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
genomic: TGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttc ... ttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
EST: gi|164195675|gb|ES002040.1|ES002040
EST:     CGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAG                         AGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC
genomic: CGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttc ... ttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcagAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGAC
                                           ttttgttttc  CT-rich tract
                                           ttttgtttt  TA-rich tract