1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgctgccacccacactaaaaaaggagttaaaagtattattttggtggaacagattaagattttacctgaaacatatcttcctctgaaccgccgtcgcagGCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAGATTGTTGCTGAGAAAGAAGGAATCCTTGATGGGTTCCGTGTGGTTATCA
species | Arabidopsis thaliana |
transcript | AT1G31160.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTCGCTTGGCAAG GCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAGEST: gi|47830352|gb|CK120036.1|CK120036
genomic: CCTCGCTTGGCAAGgtgagtcagt ... gccgtcgcagGCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAG
EST: ATGTTTTGGTCATTCCCAAGTTGAGAGATGGCTTGACCTCGCTTGGCAAG GCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAGEST: gi|164056082|gb|ES036017.1|ES036017
genomic: ATGTTTTGGTCATTCCCAAGTTGAGAGATGGCTTGACCTCGCTTGGCAAGgtgagtcagt ... gccgtcgcagGCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAG
EST: ATGTTTTGG-CATTCCCAAGTTGAGAGATGGCTTGACCTCGCTTGGCAAG GCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACAEST: gi|19877577|gb|AU238408.1|AU238408
genomic: ATGTTTTGGTCATTCCCAAGTTGAGAGATGGCTTGACCTCGCTTGGCAAGgtgagtcagt ... gccgtcgcagGCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACA
EST: ATGTTTTGGTCATTCCCAAGTTGAGAGATGGCTTGACCTCGCTTGGCAAG GCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAGEST: gi|163989231|gb|ES148678.1|ES148678
genomic: ATGTTTTGGTCATTCCCAAGTTGAGAGATGGCTTGACCTCGCTTGGCAAGgtgagtcagt ... gccgtcgcagGCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAG
EST: CTCGCTTGGCAAG GCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAG
genomic: CTCGCTTGGCAAGgtgagtcagt ... gccgtcgcagGCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAG
tggaacagattaagattttacctgaaacatatcttcctctgaaccgccgtcgcagGCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAGATTGTTGCTGAGAAAGAAGGAATCCTTGATGGGTTCCGTGTGGTTATCA
agattaagatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctgccacccacactaaaaaaggagttaaaagtattattttggtggaacagattaagattttacctgaaacatatcttcctctgaaccgccgtcgcagGCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAGATTGTTGCTGAGAAAGAAGGAATCCTTGATGGGTTCCGTGTGGTTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -gccaccc
- - - - - - acactaa
- - - - - - - - - -aaaaggag
- - - - - - - - - - - - - - - - - - - attttgg
- - - - - - - - - - - - - - - - - - - - - - - - aacagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaaac