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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaatcccaagttcgtagaatcattgacttacatttggtttagctgttttgtatcaaattgtaatatctttttcatgttttgttgccgtagGTGGGACTAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCC

Basic information

species Arabidopsis thaliana
transcript AT1G30970.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30970.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G05390.2 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------gttcaatcccaagttcgtagaatcattgacttacatttggtttagctgtt-ttgtatcaa----------------attgtaatatctttttcatgttttgttgcc---gtagGTGGGAC------TAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCC
                                                                       |||       || ||  || | | |   ||| | |||| |||   || |  ||  |||||                ||| | || || || |||   || ||| |     |||||||  |      |||  | ||||||||||| ||||| ||||| ||| | |||||||||||||| || || || |||||||||||||||||||||   |       
gtaaccttacattttccctcctttgaacaattgagtttgtgactgatttcgtcttttaaaacagcaggagagtttttgataaaattgataaacttagc-actgaaatttagttcttctctcgttagatcaatgtttaatcctatgtgattttcatttccttctcactcttggttacttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTAC------

upper sequence: AT1G30970.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA05G34280.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------------gtt--caatcccaagttcgtagaatcattgacttacatttggtttag--ctgttttgtatca--aattgtaatatctttttcatgttttgttgc---cgtagGTGGGAC------TAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCC
                                                                              ||   || |  |     | |   |  ||    | | ||| | |||   || | | || |     ||| | || || || |||   || ||| |     |||||||  |      |||  | ||||||||||| ||||| ||||| ||| | |||||||||||||| || || || |||||||||||||||||||||           
gtaaccttacatttttcctcctttgaacaattgtgactgcttccattattcaaaacagctggagtgtttttgatgaaattgataaacttagcactgaaatttagtttttctccctttagattaatcctatgtggttttggtgattttcatttccttctcactcttggttacttgtatagGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCC------

upper sequence: AT1G30970.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv01s0011g01240.t01 (Vitis vinifera), 3'ss of exon 4
-----gttcaatcccaagttcgtagaatcattgacttacatttggtttagctgttttgta---tcaaattgtaatatctttttcatgttttgttgccgtagGTGGG------ACTAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCC
      | || |  | | | || |      ||   ||| | ||   ||  |||| |  ||   |  |||| || | |  ||||    |||  ||   |||||||||      |  ||  | ||||||||||| ||||| ||||| ||| | |||||||||||||| ||||||||||| |||||||| |||| ||||   |       
caataatacagttgcca-tacgcaagtcattttgtttatagtttagttgactgtgtaataaatttcaattttagttttatttttgcttttatttattgtagGTGGGCCATCAATCAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTAC------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttagctgttttgtatcaaattgtaatatctttttcatgttttgttgccgtagGTGGGACTAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCTCCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCC
                                         ttttgtt  CT-rich tract
          ttttgtatcaaattgt  TA-rich tract