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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcctctctctcattacattgtcgtagaacaacggcattggtcactcatctatattcatcattgtctctcataatttctttttctttttatgaattcttccagTCCGTTGTCTATTTGATTGCCGTCATGCTCGGGATGACTGGGGATATTAACATCTGGTGAAACTACTCCCCAGCCAAAACCAAACTCAATCTTGTATATA

Basic information

species Arabidopsis thaliana
transcript AT1G29970.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125217704|gb|EL231787.1|EL231787
EST:     CCTGTTCAATCGCA                         TCCGTTGTCTATTTGATTGCCGTCATGCTCGGGATGACTGGGGATATTAAC
genomic: CCTGTTCAATCGCAgtgagttcct ... attcttccagTCCGTTGTCTATTTGATTGCCGTCATGCTCGGGATGACTGGGGATATTAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatattcatcattgtctctcataatttctttttctttttatgaattcttccagTCCGTTGTCTATTTGATTGCCGTCATGCTCGGGATGACTGGGGATATTAACATCTGGTGAAACTACTCCCCAGCCAAAACCAAACTCAATCTTGTATATA
                          tttctttttcttttta  CT-rich tract
                      ataatttctttttctt  TA-rich tract