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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgctatttcttactattgatgcagtgagtcaaatgggttttctttttaagcttaaaataattgtgtatttgcatctccagGAGATTATGAGGGTTTGTATCAGAAGAGGAGGTGTTGATCTGGGGCAAAGTCATGAACGATGGCTCTCAACAGTATCACAAGCACCCAACGTTATATCGA

Basic information

species Arabidopsis thaliana
transcript AT1G28380.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125248243|gb|EL262328.1|EL262328
EST:     CGTTTGGTACCTCGGTTAGCTCTGCTGTTGTCATGCATACCAAGAACGAG                         GAGATTATGAGGGTTTGTATCAGAAGAGGAGGT
genomic: CGTTTGGTACCTCGGTTAGCTCTGCTGTTGTCATGCATACCAAGAACGAGgttcgctatt ... gcatctccagGAGATTATGAGGGTTTGTATCAGAAGAGGAGGT
EST: gi|116397734|gb|EG440326.1|EG440326
EST:     CGTTTGGTACCTCGGTTAGCTCTGCTGTTGTCATGCATACCAAGAACGAG                         GAGATTATGAGGGTTTGTATCAGAAGAGGAGGTGTTGATCTGGGGCAAAGT
genomic: CGTTTGGTACCTCGGTTAGCTCTGCTGTTGTCATGCATACCAAGAACGAGgttcgctatt ... gcatctccagGAGATTATGAGGGTTTGTATCAGAAGAGGAGGTGTTGATCTGGGGCAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtcaaatgggttttctttttaagcttaaaataattgtgtatttgcatctccagGAGATTATGAGGGTTTGTATCAGAAGAGGAGGTGTTGATCTGGGGCAAAGTCATGAACGATGGCTCTCAACAGTATCACAAGCACCCAACGTTATATCGA
                                              catctcc  CT-rich tract
                 tttttaagcttaaaat  TA-rich tract