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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttacttaaactatcttcagtttacagttatgcaaattctctttctctttgttaacctttgaatcgtttcggatttgaagGCACTCCTTGTATTACGGACT

Basic information

species Arabidopsis thaliana
transcript AT1G26530.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116440485|gb|EG483077.1|EG483077
EST:     ATTGATCTTGAGAAGGGAATGATGGTGTTTGTACGCAAAAT                         GCACTCCTTGTATTACGGACTG
genomic: ATTGATCTTGAGAAGGGAATGATGGTGTTTGTACGCAAAATgtgagttact ... ggatttgaagGCACTCCTTGTATTACGGACTG
EST: gi|116440489|gb|EG483081.1|EG483081
EST:     ATTGATCTTGAGAAGGGAATGATGGGTGTTTGTACGCAAAAT                         GCACTCCTTGTATTACGGACTG
genomic: ATTGATCTTGAGAAGGGAATGATGG-TGTTTGTACGCAAAATgtgagttact ... ggatttgaagGCACTCCTTGTATTACGGACTG
EST: gi|116440488|gb|EG483080.1|EG483080
EST:     ATTGATCTTGAGAAGGGAATGATGGTGTTTGTACGCAAAAT                         GCACTCCTTGTATTACGGACTG
genomic: ATTGATCTTGAGAAGGGAATGATGGTGTTTGTACGCAAAATgtgagttact ... ggatttgaagGCACTCCTTGTATTACGGACTG
EST: gi|116440490|gb|EG483082.1|EG483082
EST:     ATTGATCTTGAGAAGGGAATGATGGTGTTTGTACGCAAAAT                         GCACTCCTTGTATTACGGACTG
genomic: ATTGATCTTGAGAAGGGAATGATGGTGTTTGTACGCAAAATgtgagttact ... ggatttgaagGCACTCCTTGTATTACGGACTG
EST: gi|116440491|gb|EG483083.1|EG483083
EST:     ATTGATCTTGAGAAGGGAATGATGGTGTTTGTACGCAAAAT                         GCACTCCTTGTATTACGGACTG
genomic: ATTGATCTTGAGAAGGGAATGATGGTGTTTGTACGCAAAATgtgagttact ... ggatttgaagGCACTCCTTGTATTACGGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttatgcaaattctctttctctttgttaacctttgaatcgtttcggatttgaagGCACTCCTTGTATTACGGACT
                        tgttaac  putative branch site (score: 2)
                      tttgttaa  TA-rich tract