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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccttttctttttagatgttgatgtctacatgtagaagaatggaagctgaagctgttttcttttcatataaatgggacattgcatttattgtgtagGTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAG

Basic information

species Arabidopsis thaliana
transcript AT1G26260.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26260.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G13860.1 (Glycine max), 3'ss of exon 5
gtaagtccttttctt----tttagatgttgatgtctacatgtagaagaatggaagctgaagctgttttcttttcatataaatgggacattgcatttattg--tgtagGTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAG
||   | ||    ||     |   |  || |      ||| | |     ||      |       || ||||| | ||   |     ||| | ||   ||  | ||||| ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||||| | ||  | |||
gtggcttctaagtttgaaactagaaaatttactatgtcatattgttatttgtgtttaggtatcacttccttttaacattgtttat-tattactttctatgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG

upper sequence: AT1G26260.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA01G09400.1 (Glycine max), 3'ss of exon 4
gtaagtccttttctttttagatgttgatgtctacatgtagaagaatggaagctgaagct--gttttcttttcatataa-atgggacattgcatttattgtg----tagGTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAG
       ||| |   |||  |    ||    |   | |   | | ||  |  ||    |  || |    | | | ||| || |    ||  | ||  | ||    ||||| ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||||| | ||  | |||
---gtggcttctaagtttgaacccagaaaattcactatgtcatattgttatttgtgtttatgtatcacatccttttaacattgttatttttactttctatgcttttagGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAG

upper sequence: AT1G26260.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0010g00740.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtccttttctttttagatgttgatgtctacatgtagaagaa--------tggaagctgaagctgttttcttttcatataaatgggacattgcatttattgtgtagGTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAG
||  ||   ||    || | |  |||  | | | |  ||||   |        |||||   || | || || | |  |  ||     ||  ||||| |   || ||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| | ||  | |||
gttggtttgttggaattaataacttggggaccataattagattgaattatctatggaattcgatgttgcttccgtggctcattccatgggaattgcttgatttttgtagGTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaagctgaagctgttttcttttcatataaatgggacattgcatttattgtgtagGTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAG
              ttttcttttcatataa  TA-rich tract