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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatgatccatgccttttaactcttgagagtactcatgagaatggagttaattagctagctttaatagtgcaaaccgcgaacctcgtgtttgcagATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCGGGGAATGACTACGAAGTGGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGA

Basic information

species Arabidopsis thaliana
transcript AT1G26230.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26230.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------------------------------------------gtgaatgatccatgccttttaactcttgagagtactcatgagaatggagtta-attagctagctttaatagtgcaaaccgcgaacctcgtgtttgcagATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCGGGGAATGACTACGAAGTGGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGA
                                                                                 |  ||  ||    |||   | || | | ||    | |||||    | | |||| || |  || |  |  ||||      |  |     |||||| |||| |||||||||||||| |||||||| ||||||||||| |||||||| ||   |||||| |||||||||||  ||||| ||| ||| ||||||||||
gtatcaagactatttcttatattttcatgaaaaaaattataattcagaaaattgttaaaaattgtaagcattgaaacaaagagaatatattgtatttgggtattaatattatctttaagaattatataatattacctggaattgactgc-caaat-----aattataaattgcagGTTGAGGATCATGAGCTTGCACATGTTGCTGCAGTTAGTGCTGGGAATGATTATACAGTGGGCAACATGATTTCTGATGCTATTCGACAGGTAGGAAGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggagttaattagctagctttaatagtgcaaaccgcgaacctcgtgtttgcagATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCGGGGAATGACTACGAAGTGGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGA
                   ctttaat  putative branch site (score: 4)
     agttaatta  TA-rich tract