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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcctcatttcttttatttcgtgtgactgtttggtttagtatatgagctgccaattgtttatattaacaactcactgtttatgtagGTATACCCGATGTACAAAGCTTTCATTGAGCCAGATCTCCAGACTGCTCAAATCAAAATCATTAATAAATTCAACCCCTTCACTGGTTTTCAGAGCCCGA

Basic information

species Arabidopsis thaliana
transcript AT1G26190.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26190.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA01G09660.1 (Glycine max), 3'ss of exon 4
gtttgtcctcatttcttttatttcgtgtgactgtttggtttagtatatgagctgccaattgtttatattaacaactcactgtttatgtagGTATACCCGATGTACAAAGCTTTCATTGAGCCAGATCTCCAGACTGCTCAAATCAAAATCATTAATAAATTCAACCCCTTCACTGGTTTTCAGAGCCCGA
|||  | ||  | |  ||  |||| | |   | |   | ||   | |  | |||  | || |  |  |    || |       | |  |||| || || |||||||| || || || ||||||||||||||||| || || || |||||||| || |||||||| || || ||||| || ||||| || |
gttcatacttttataattcctttcatctttttatacagatttagaaaatatctgt-atttctagaagtgcttaagtttaaacattttcagGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA

upper sequence: AT1G26190.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 4
gtttgtcctcatttcttttatttcgtgtgactgtttggttt---agtatatgagctgcca--attgtttatattaacaactcactgtttatgtagGTATACCCGATGTACAAAGCTTTCATTGAGCCAGATCTCCAGACTGCTCAAATCAAAATCATTAATAAATTCAACCCCTTCACTGGTTTTCAGAGCCCGA
|||  | |   | |  ||  ||| || |   | |   | ||   |  ||||| | | |||  | || |||  || | |   || | |      |||| || || |||||||| || || || ||||||||||||||||| || || || |||||||| || |||||||| || || ||||| || ||||| || |
gttcatacgtttataattcctttggtctttttatacagatttggaaaatatgtgtttccagaagtgcttaagtttaaa---cattttc-----agGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA

upper sequence: AT1G26190.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 3'ss of exon 3
gtttgtcctcatttcttttatttcgtgtgactgtttgg--tttagtatatgagctgccaatt--gtttatattaacaactcactgtttatgtagGTATACCCGATGTACAAAGCTTTCATTGAGCCAGATCTCCAGACTGCTCAAATCAAAATCATTAATAAATTCAACCCCTTCACTGGTTTTCAGAGCCCGA
|||  | | | |  | | |  |   |  | |  ||  |  ||| |  |      |||   |   |  | | | ||| ||   || ||||   ||||||| || |||||||| ||||| |||||||||||||||   || || || || |||||||  ||||| |||||||| |||||||| |||||||| || |
gttctttcacttaccctctgctaaatacgccccttaagaattttgactggattttgcttttcaagaatttctcaactacattct-tttaaacagGTATATCCAATGTACAAGGCTTTTATTGAGCCAGATCTCGGAACAGCACATATAAAAATCACCAATAAGTTCAACCCATTCACTGGATTTCAGAGTCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtttagtatatgagctgccaattgtttatattaacaactcactgtttatgtagGTATACCCGATGTACAAAGCTTTCATTGAGCCAGATCTCCAGACTGCTCAAATCAAAATCATTAATAAATTCAACCCCTTCACTGGTTTTCAGAGCCCGA
                     aattgtttatattaac  TA-rich tract