1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatctatctatgtatctcttgacgtcctcttttttcctcttttgctttggtgaaacaacagtgacgggtttgaattgtatacatgtctagttgttgtaactgttcacaatacttcttctggttgtgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGCAGTAGAAACG
species | Arabidopsis thaliana |
transcript | AT1G25260.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTGATACTGGACTTCTTGTTACAGATATGCCAAAGGAAGAAGTTGAAAG CTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGEST: gi|86050071|gb|DR345826.1|DR345826
genomic: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAGgtatctatct ... tgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAG
EST: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAG CTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGAEST: gi|86050072|gb|DR345827.1|DR345827
genomic: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAGgtatctatct ... tgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGA
EST: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAG CTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGCEST: gi|86050070|gb|DR345825.1|DR345825
genomic: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAGgtatctatct ... tgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGC
EST: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGA-GTCGAAAG CTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGCEST: gi|86075213|gb|DR370970.1|DR370970
genomic: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAGgtatctatct ... tgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGC
EST: AGAAGTCGAAAG CTTATTTAACGCTTATGRGGATTCCGACTTTTCAAGGACCGGAAGCATTGCEST: gi|164153192|gb|ES091719.1|ES091719
genomic: AGAAGTCGAAAGgtatctatct ... tgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGC
EST: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAG CTTATTTAACGCTTAEST: gi|164160117|gb|EL968252.1|EL968252
genomic: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAGgtatctatct ... tgtattgcagCTTATTTAACGCTTA
EST: CTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAG CTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGCEST: gi|86050073|gb|DR345828.1|DR345828
genomic: CTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAGgtatctatct ... tgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGC
EST: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAG CTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGCEST: gi|86050067|gb|DR345822.1|DR345822
genomic: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAGgtatctatct ... tgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGC
EST: GGTGATACTGGACTTCTTGTTACAGATATGCCAAAGGAAGAAGTTGAAAG CTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGC
genomic: GGTGATACTGGACTTCTTGTTACTGATATGCCAAAGGAAGAAGTCGAAAGgtatctatct ... tgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGC
tacatgtctagttgttgtaactgttcacaatacttcttctggttgtgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGCAGTAGAAACG
ttgtaac putative branch site (score: 2)
aatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctatctatgtatctcttgacgtcctcttttttcctcttttgctttggtgaaacaacagtgacgggtttgaattgtatacatgtctagttgttgtaactgttcacaatacttcttctggttgtgtattgcagCTTATTTAACGCTTATGAGGATTCCGACTTTTCAAGGACCGGAAGCATTGCAGTAGAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT