1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagttctttgttcatttgtaagactactgctccaaccatatgcaatttgaaactttttaatctgtaaagttttcatcggtgttacctttagGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATAGCTACCGAAAAAGAGCTTAAG
species | Arabidopsis thaliana |
transcript | AT1G24180.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAG GTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATAEST: gi|116486096|gb|EG528688.1|EG528688
genomic: ACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAGgttagttctt ... ttacctttagGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATA
EST: ACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAG GTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATAEST: gi|47828819|gb|CK118503.1|CK118503
genomic: ACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAGgttagttctt ... ttacctttagGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATA
EST: ACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAG GTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATAEST: gi|116465222|gb|EG507814.1|EG507814
genomic: ACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAGgttagttctt ... ttacctttagGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATA
EST: ACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAG GTGCGTGATCCAATTTGAAAGGGTGCGAAA
genomic: ACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAGgttagttctt ... ttacctttagGTGCGTGATCCAATT-GAAAGGGTGCGAAA
catatgcaatttgaaactttttaatctgtaaagttttcatcggtgttacctttagGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATAGCTACCGAAAAAGAGCTTAAG
ttttaat putative branch site (score: 3)
ttaccttt putative PPT
aatttgaaacttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttctttgttcatttgtaagactactgctccaaccatatgcaatttgaaactttttaatctgtaaagttttcatcggtgttacctttagGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATGACATAGCTACCGAAAAAGAGCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT