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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactcaacacagagttctctccaaaagcatttcaattactcaaatactaaaagctataactttcagGTGGACTGATGTACAAACTACCTCAGAGCAATCTACAATACGTGACATCAATAACATTCTTGCTCACCACCTACGCCAAATATATGAAATCCACAAAACA

Basic information

species Arabidopsis thaliana
transcript AT1G22880.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22880.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA06G48140.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------------------------------------------gtaaactcaacacagagttctctccaaaagcatt-tcaattactcaaatactaaaagctataacttt-------cagGTGGACTGATGTACAAACTACCTCAGAGCAATCTACAATACGTGACATCAATAACATTCTTGCTCACCACCTACGCCAAATATATGAAATCCACAAAACA
                                                                                                          |||| | |      ||| || |  ||||| ||| | ||   | | |||  ||   | ||    | |       |||| ||||| |||||||| || ||| | ||||| || || || |||||||| ||||||||||||||||| |||||  | || ||||||  | | | ||| ||
gtaaaggcaacatcactactgaattttcaaaacacagctgggtcaatcaaagtcatgcattactgatatacaagaaaacatgacaaatatttgcatccacgatcaataaatttactttgaagtgcttt--aaaagtattataaaaggcactaattgtatgtggtacttttatttatgggcagGGGGACTCATGTACAAGCTTCCTGAAAGCAACCTCCAGTATGTGACATCTATAACATTCTTGCTCACAACCTATTCAAAGTATATGTCAGCTAAAAAGCA

upper sequence: AT1G22880.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv18s0089g00210.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------gtaaactcaa---cacagagttctctccaaaagcattt-caattactcaaatactaaaagctataactttcagGTGGACTGATGTACAAACTACCTCAGAGCAATCTACAATACGTGACATCAATAACATTCTTGCTCACCACCTACGCCAAATATATGAAATCCACAAAACA
                                  |||| | |       | | || |     ||| ||||    ||   |    |     ||      |  | |||| || ||||||| ||| ||  || |||| ||| |||| |||||||||||||||||||||||||||| ||| || ||||| ||||||| | || |||| ||
gttctccaattgcacagtatcacaagttagtgtttaaatttatatttgtatattttttgtggaaaacattggtgatggttttggtgtgggaa------atatgcagGAGGGCTGATGTTCAAGCTGGCTGAGAGTAATTTACAGTACGTGACATCAATAACATTCTTGCTCAGCACATATGCCAAGTATATGACAGCCTCAAAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttctctccaaaagcatttcaattactcaaatactaaaagctataactttcagGTGGACTGATGTACAAACTACCTCAGAGCAATCTACAATACGTGACATCAATAACATTCTTGCTCACCACCTACGCCAAATATATGAAATCCACAAAACA
                                                ctttc  CT-rich tract
                              aaatactaaaa  TA-rich tract