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gtgagtgttatttgtgatcatattaaaacttgttattgatgttgttccttaatctttggatttgtgaagttgtactgatggtcaattacttcaatggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
species | Arabidopsis thaliana |
transcript | AT1G20693.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCTEST: gi|164010533|gb|ES061091.1|ES061091
genomic: GAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
EST: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCTEST: gi|164158781|gb|ES187958.1|ES187958
genomic: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
EST: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCEST: gi|163969828|gb|ES148976.1|ES148976
genomic: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTC
EST: AAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCTEST: gi|164237972|gb|ES129256.1|ES129256
genomic: AAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
EST: CTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCTEST: gi|116400368|gb|EG442960.1|EG442960
genomic: CTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
EST: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACT GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
genomic: TCCGTGAGACTTTCAAGAAGGAAAACCCCAAGAACAAGTCTGTAGCTACTgtgagtgtta ... tggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
taatctttggatttgtgaagttgtactgatggtcaattacttcaatggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
tactgat putative branch site (score: 2)
aattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttatttgtgatcatattaaaacttgttattgatgttgttccttaatctttggatttgtgaagttgtactgatggtcaattacttcaatggattacagGTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG