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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatatccatacgagactcaatatgttcactttccatctaaacaaagttaagtttctcaactgctaacacttctttttccgcatttcagGGCCTTAATCAGGCAACATGACATAAAATAGGACTGGCTTTGGATTAGAGAAAAGCTCCCTTAAACATTTTGTATCCCTTTTTACTTTTATTCCATGTTT

Basic information

species Arabidopsis thaliana
transcript AT1G19680.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164062195|gb|ES070874.1|ES070874
EST:     CCAGACGTAGTAATAAAAGATTAAGTCATTCTTTTTCAAGCGTTGAG                         GGCCTTAATCAGGCAACATGACATAAAATAGGACTGGCTTTGGATTAGAGA
genomic: CCAGACATAGTAATAAAAGATTAAGTCATTCTTTTTCAAGCGTTGAGgtaaaatatc ... cgcatttcagGGCCTTAATCAGGCAACATGACATAAAATAGGACTGGCTTTGGATTAGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctaaacaaagttaagtttctcaactgctaacacttctttttccgcatttcagGGCCTTAATCAGGCAACATGACATAAAATAGGACTGGCTTTGGATTAGAGAAAAGCTCCCTTAAACATTTTGTATCCCTTTTTACTTTTATTCCATGTTT
                           tgctaac  putative branch site (score: 1)
                                   cttctttttccgcatt  CT-rich tract
         aaagttaa  TA-rich tract