1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttggaagcctagctcctttaatctctctttgccattaggaagcattgtaaaatcaatggagatttgttctgacaactttgttgatggtctttttctctgctgcagTGGTTGGTTCTTAGATATGCTGTTCTTAATTTACAAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTTTCTGTTTCCTTGGATTTAGCTA
species | Arabidopsis thaliana |
transcript | AT1G19600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGATGAATTAAGCAAAGAAGATTTCACAGGCTCTAAG TGGTTGGTTCTTAGATATGCTGTTCTTEST: gi|164052709|gb|ES168189.1|ES168189
genomic: GCAGATGAATTAAGCAAAGAAGATTTCACAGGCTCTAAGgttggaagcc ... tctgctgcagTGGTTGGTTCTTAGATATGCTGTTCTT
EST: GCAGATGAATTAAGCAAAGAAGATTTCACAGGCTCTAAG TGGTTGGTTCTTAGATATGCTGTTCTT
genomic: GCAGATGAATTAAGCAAAGAAGATTTCACAGGCTCTAAGgttggaagcc ... tctgctgcagTGGTTGGTTCTTAGATATGCTGTTCTT
aatcaatggagatttgttctgacaactttgttgatggtctttttctctgctgcagTGGTTGGTTCTTAGATATGCTGTTCTTAATTTACAAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTTTCTGTTTCCTTGGATTTAGCTA
tctttttctctgctgc CT-rich tract
atttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggaagcctagctcctttaatctctctttgccattaggaagcattgtaaaatcaatggagatttgttctgacaactttgttgatggtctttttctctgctgcagTGGTTGGTTCTTAGATATGCTGTTCTTAATTTACAAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTTTCTGTTTCCTTGGATTTAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG