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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcaactttgtaatttcttctgtgatctatcatcggccctccagcatgtcttgttgtcatgaagttcatcaataaaacaatatgagatttcttctatgtcatcatttcttaatttctcgttgactcgttgtgcttctacactgctccacttagtgatgttttttcatccaaatatcttttatagGAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G17350.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164065674|gb|ES003344.1|ES003344
EST:     GGAGATCCCAGATAAAGGAGGTGGATCAGATTGCACTG                         GAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGA
genomic: GGAGATCCCAGATAAAGGAGATGGATCAGATTGCACTGgttagcaact ... tcttttatagGAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcttctacactgctccacttagtgatgttttttcatccaaatatcttttatagGAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAG
                                           tatctttt  CT-rich tract
                                        aaatatcttttata  TA-rich tract