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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataagtgagcttttatagtgctggtttgttccatatgttaatcatgagttagcttgtaacatttatatctcagGTTCTTGCTTTATGTTCCTACACAGCCCTGTTGGATGAGAGTGCAACACACGGTTTGTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G17290.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124935320|gb|EL012315.1|EL012315
EST:     TCGGGAATCCTCAATCTCTTGGTCAACAGCCTATAACATTCTTCAGAGAG                         GTTCTTGCTTTATGTTCCTACACAGCCCTGTTGGA
genomic: TCGGGAATCCTCAATCTCTTGGTCAACAGCCTATAACATTCTTCAGAGAGgtaaataagt ... tatatctcagGTTCTTGCTTTATGTTCCTACACAGCCCTGTTGGA
EST: gi|164012327|gb|ES085898.1|ES085898
EST:     TCGGGAATCCTCAATCTCTTGGTCAACAGCCTATAACATTCTTCAGAGAG                         GTTCTTGCTTTATGTTCCTACAC
genomic: TCGGGAATCCTCAATCTCTTGGTCAACAGCCTATAACATTCTTCAGAGAGgtaaataagt ... tatatctcagGTTCTTGCTTTATGTTCCTACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctggtttgttccatatgttaatcatgagttagcttgtaacatttatatctcagGTTCTTGCTTTATGTTCCTACACAGCCCTGTTGGATGAGAGTGCAACACACGGTTTGTTCAG
                                   ttgtaac  putative branch site (score: 2)
                                   ttgtaacatttatat  TA-rich tract