1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagttgataatcaacaagaatattcgtatcattaccatatagccatgctctgtgatgctttcttcgattgtgtaatttagtcaacatctctgacattagttttctcttttgcctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
species | Arabidopsis thaliana |
transcript | AT1G16470.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030204|gb|DR325957.1|DR325957
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030200|gb|DR325953.1|DR325953
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030188|gb|DR325941.1|DR325941
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030201|gb|DR325954.1|DR325954
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030207|gb|DR325960.1|DR325960
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030206|gb|DR325959.1|DR325959
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030192|gb|DR325945.1|DR325945
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030193|gb|DR325946.1|DR325946
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030184|gb|DR325937.1|DR325937
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030185|gb|DR325938.1|DR325938
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030177|gb|DR325930.1|DR325930
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030203|gb|DR325956.1|DR325956
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030209|gb|DR325962.1|DR325962
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030197|gb|DR325950.1|DR325950
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030190|gb|DR325943.1|DR325943
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGEST: gi|86030210|gb|DR325963.1|DR325963
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
EST: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCT GTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
genomic: TCATTGCAACTGAAAAGAAGTTGCCTTCTATTCTGGTTGATGAAGCATCTgtaagttgat ... cctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
attgtgtaatttagtcaacatctctgacattagttttctcttttgcctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
ctctgac putative branch site (score: 3)
ttttctcttttgcctg putative PPT
taatttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgataatcaacaagaatattcgtatcattaccatatagccatgctctgtgatgctttcttcgattgtgtaatttagtcaacatctctgacattagttttctcttttgcctgtttcagGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG