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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaatcctaaatccgaacacactctttcttttacctgaaaaaatgttgttagtctttgtattcatgaatcaatggtaattttcttatagtatctttgtattcatcaatcaatggtatttttctgatcgtagGAAAGCACTTAGCAGAGCATTGTAGAGCTGAGTACTCCAAGGTTCCAAACTTTATGTTATGGGTAGTTGCTGAAATCGCTGTAGTAGCTTGTGATATTCC

Basic information

species Arabidopsis thaliana
transcript AT1G15960.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15960.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 5
gtttaatcctaaatccgaacacactctttcttttacctgaaaaaatgttgttagtctttgtattcatgaatcaatggtaattttcttatagtatctttgt-attcatcaatcaatggtat-ttttctgatcgtagGAAAGCACTTAGCAGAGCATTGTAGAGCTGAGTACTCCAAGGTTCCAAACTTTATGTTATGGGTAGTTGCTGAAATCGCTGTAGTAGCTTGTGATATTCC
      | ||  || | || |  |||||  ||||  ||| | |||| |  | |||      ||  | |||| |||| ||| ||||||      ||||||| ||  || | || |   | | ||||||| | | ||||| |||| |||||||||||||||||||||| || ||   ||| || ||||||||  | |||||  |||||||||| || ||||| || ||||| |||||
-----gtacttgattc-aataatctcttgttttttactggataaatttgatcagt------atatacgaatgaatgctaactttctt------tctttgttatcaattattctaaattctattttctgcttgcagGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCTAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttcttatagtatctttgtattcatcaatcaatggtatttttctgatcgtagGAAAGCACTTAGCAGAGCATTGTAGAGCTGAGTACTCCAAGGTTCCAAACTTTATGTTATGGGTAGTTGCTGAAATCGCTGTAGTAGCTTGTGATATTCC
                                           ttctgat  putative branch site (score: 3)
                                      tatttttct  CT-rich tract
       ttatagtat  TA-rich tract