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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtgaagttctatttcgacctaattttcatgattaacatcaccataacttgtatttgaaatgtgtggtggatgcttatagtagaagcttttcaatggtctgctatgtatgttctcctcgacatatcatacaagctgaaaattgtttgtactttgttgtagACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G15730.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15730.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv09s0002g08260.t01 (Vitis vinifera), 3'ss of exon 4
gtattgtgaagttctatttcgacctaattttcatgattaacatcaccataacttgtatttgaaatgtgtggtggatgcttatagtagaagcttttcaatggtctgctatgtatgttctcctcgacatatcatacaagctgaa-aattgtttgtactttgttgt----agACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
                                                                  |||    ||   | ||  ||  | |      |   |   ||    ||||||   | |   | || || |  ||||   |||   |  ||  || ||     ||| |||||||||||||||||||||| | |||||| || | ||||||||||||
------------------------------------------------------------------tgta-cagaaaatcatgctaagatccaggatagatttaacttcagatgttcgatttg--ttgtcctaaagcctgattgatttacttaaccatgatgccaccagATTGATCTTGTTGGTGAGCCAGAAATTGCTTCATTGGTCCAGCGGATAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474224|gb|EG516816.1|EG516816
EST:     ATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAG                         ACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
genomic: ATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAGgtattgtgaa ... tttgttgtagACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
EST: gi|116474225|gb|EG516817.1|EG516817
EST:     ATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAG                         ACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
genomic: ATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAGgtattgtgaa ... tttgttgtagACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
EST: gi|164041492|gb|ES212142.1|ES212142
EST:     GTAGGCGGTTGAACAAATAGCTTACGCGGATCGTATACATTGTTAACAAG                         ACTGATCTTGTTGGTGAGCCAGAAC
genomic: G-AGGCGGTTGAACAAATAGCTTACGCGGATCGTAT-CATTGTTAACAAGgtattgtgaa ... tttgttgtagACTGATCTTGTTGGTGAGCCAGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgttctcctcgacatatcatacaagctgaaaattgtttgtactttgttgtagACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
                                            ctttgtt  CT-rich tract
                               aaaattgttt  TA-rich tract