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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttacttgaattatgttattttgctgtttcatcatatgatatcttctaaagtttgatactgagatgaaattggattttggatcttcagGTTGCACCAAAGCTGTTTGCGAAACTAAAATGAAAAGAGGTGAAGCTGGAGACTCTATTGTCTTGAGTTTGCTACATGTGGTTTAAAATTGATGTATAAA

Basic information

species Arabidopsis thaliana
transcript AT1G15120.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125271328|gb|EL285413.1|EL285413
EST:     CATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGT                         GTTGCACCAAAGCTGTTTGCGAAACTAAAATGAAAAGAGGTGAAG
genomic: CATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttact ... ggatcttcagGTTGCACCAAAGCTGTTTGCGAAACTAAAATGAAAAGAGGTGAAG
EST: gi|164000571|gb|ES056006.1|ES056006
EST:     ATTGACAAATGT                         GTTGCACCAAAGCTGTTTGCGAAACTAAAATGAAAAGAGGTGAAGCTGGAG
genomic: ATTGACAAATGTgtaagttact ... ggatcttcagGTTGCACCAAAGCTGTTTGCGAAACTAAAATGAAAAGAGGTGAAGCTGGAG
EST: gi|124962031|gb|EL036483.1|EL036483
EST:     AGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGT                         GTTGCACCAAAGCTGTTT
genomic: AGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttact ... ggatcttcagGTTGCACCAAAGCTGTTT
EST: gi|125269432|gb|EL283517.1|EL283517
EST:     AGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGT                         GTTGCACCAAAGCTGTTTGCGAAAC
genomic: AGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttact ... ggatcttcagGTTGCACCAAAGCTGTTTGCGAAAC
EST: gi|164021827|gb|ES181099.1|ES181099
EST:     ACTGGCCAGTA-TTTGACTACTGGCAATGCATTGACAAATGT                         GTTGCACCAAAGCTGTTTG
genomic: ACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttact ... ggatcttcagGTTGCACCAAAGCTGTTTG
EST: gi|124996430|gb|EL068699.1|EL068699
EST:     CACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGT                         GTTGCACCAAAGCTGTTTGC-AAAC
genomic: CACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttact ... ggatcttcagGTTGCACCAAAGCTGTTTGCGAAAC
EST: gi|124712260|gb|EH803662.1|EH803662
EST:     AGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGT                         GTTGCACCAAAGCTGTTTGCGAAAC
genomic: AGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttact ... ggatcttcagGTTGCACCAAAGCTGTTTGCGAAAC
EST: gi|124963446|gb|EL037781.1|EL037781
EST:     CATTGACAAATGT                         GTTGCACCAAAGCTGTTTGCGAAACTAAAAAGAAAAGAGGTGAAGCTGGAG
genomic: CATTGACAAATGTgtaagttact ... ggatcttcagGTTGCACCAAAGCTGTTTGCGAAACTAAAATGAAAAGAGGTGAAGCTGGAG
EST: gi|164191369|gb|ES008970.1|ES008970
EST:     CAATGCATTGACAAATGT                         GTTGCACCAAAGCTGTTTGCGAAACTAAAATGAAAAGAGGTGAAGCTGGAG
genomic: CAATGCATTGACAAATGTgtaagttact ... ggatcttcagGTTGCACCAAAGCTGTTTGCGAAACTAAAATGAAAAGAGGTGAAGCTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatatcttctaaagtttgatactgagatgaaattggattttggatcttcagGTTGCACCAAAGCTGTTTGCGAAACTAAAATGAAAAGAGGTGAAGCTGGAGACTCTATTGTCTTGAGTTTGCTACATGTGGTTTAAAATTGATGTATAAA
                                                tcttc  CT-rich tract
             taaagttt  TA-rich tract