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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctaaagctaaagtttttgagcttctgagttctctattttggtccaatttgtctgctgcagcatttctgatttggactattttcagGCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGTGCTACATTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G13770.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA01G07190.1 (Glycine max), 3'ss of exon 4
gtgagctaa-agctaaagtttttgagcttctgagttctctattttggtccaatttgtctgctgcagcatttctgatttggactattttcagGCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGTGCTACATTTCAG
|| ||  |   | |||   ||||  | |  ||   |   | |  |        |||  |  | ||  | |  | |     |    |||||||||||  ||||||| ||||| ||||| |||||||| || || ||||| ||||| || ||||||
gtaaggcactggttaactgtttttggatgttgttcttgttttcataagaagtcttgaatagtacatgagtggtcaacgaaatgcctttcagGCTCTCCTGAGTGCTATTGGGGTTGGGGAGAAATCAGCTACAGTTATTGGTGCCACTTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069179|gb|DR364936.1|DR364936
EST:     GGCCTCTCAACTTATACAAAGATGATGCTTTCCACTCAG                         GCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGT
genomic: GGCCTCTCAACTTATACAAAGATGATGCTTTCCACTCAGgtgagctaaa ... ctattttcagGCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGT
EST: gi|19876024|gb|AU236855.1|AU236855
EST:     GGCCTCTCAACTTATACAAAGATGATGCTTTCCACTCAG                         GCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGT
genomic: GGCCTCTCAACTTATACAAAGATGATGCTTTCCACTCAGgtgagctaaa ... ctattttcagGCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGT
EST: gi|86069180|gb|DR364937.1|DR364937
EST:     GGCCTCTCAACTTATACAAAGATGATGCTTTCCACTCAG                         GCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGT
genomic: GGCCTCTCAACTTATACAAAGATGATGCTTTCCACTCAGgtgagctaaa ... ctattttcagGCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctattttggtccaatttgtctgctgcagcatttctgatttggactattttcagGCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGTGCTACATTTCAG
                                 ttctgat  putative branch site (score: 3)
                                             ctattttc  putative PPT
                                            actatttt  TA-rich tract