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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcaatcatatatattaattatgttgatgttttttgtttttttttactaaaggctaatgattttggcagGTATATGGGTGTGAAGATCTTGAGAGAGAGACTCACCAAGAAGTAGGGTTTTGAATCGGATCAGGGGTTTTGGGAAAACGTTATATTAAAAATGAAATGA

Basic information

species Arabidopsis thaliana
transcript AT1G12570.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082994|gb|DR378753.1|DR378753
EST:     GGTTATTGTCCCGGGACAAATCCTCAAGCCACGGTTATGATGCTTGGCAG                         GTATATGGGTGTGAAGATCTTGAGAGAGAGACTCACCAAGAAGTAGGGTTT
genomic: GGTTATTGTCCCGGGACAAATCCTCAAGCCACGGTTATGATGCTTGGCAGgtaaaatcaa ... attttggcagGTATATGGGTGTGAAGATCTTGAGAGAGAGACTCACCAAGAAGTAGGGTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattatgttgatgttttttgtttttttttactaaaggctaatgattttggcagGTATATGGGTGTGAAGATCTTGAGAGAGAGACTCACCAAGAAGTAGGGTTTTGAATCGGATCAGGGGTTTTGGGAAAACGTTATATTAAAAATGAAATGA
         ttgatgttttttgttt  TA-rich tract