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gtaaactatatgtccgaccctaatcagtactcttacaacatacacatcaatgacctccttcttaacatttgtctatctcatcagGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAATTTGATGGTATCCTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAAAG
species | Arabidopsis thaliana |
transcript | AT1G11910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: NNNNNAGTAATGATGCTGTCACAGTTGGCGATTTAGTTGTCAAGGATCAG GAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAAEST: gi|116417009|gb|EG459601.1|EG459601
genomic: TTTTTAGTAATGATGCTGTCACAGTTGGCGATTTAGTTGTCAAGGATCAGgtaaactata ... atctcatcagGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAA
EST: CGATTTAGTTGTCAAGGATCAG GAGTTTATCGAGGCAACCCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAEST: gi|301502694|gb|HO208234.1|HO208234
genomic: CGATTTAGTTGTCAAGGATCAGgtaaactata ... atctcatcagGAGTTTATCGAGGCAA-CCAAGGAGCCTGGTATAACATTTGTTGTAGCTAA
EST: NNNNNAGTAATGATGCTGTCACAGTTGGCGATTTAGTTGTCAAGGATCAG GAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAAEST: gi|125084571|gb|EL144733.1|EL144733
genomic: TTTTTAGTAATGATGCTGTCACAGTTGGCGATTTAGTTGTCAAGGATCAGgtaaactata ... atctcatcagGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAA
EST: TAGTAATGATGCTGTCACAGTTGGCGATTTAGTTGTCAAGGATCAG GAGTTTATCGAGGCAACCAAGGEST: gi|125263949|gb|EL278034.1|EL278034
genomic: TAGTAATGATGCTGTCACAGTTGGCGATTTAGTTGTCAAGGATCAGgtaaactata ... atctcatcagGAGTTTATCGAGGCAACCAAGG
EST: TAGTAATGAATGCTGTCACAGTTGGCGATTTAGTTGTCAAGGATCAG GAGTTTATCGAGGCAACCAAGGAG
genomic: TAGTAATG-ATGCTGTCACAGTTGGCGATTTAGTTGTCAAGGATCAGgtaaactata ... atctcatcagGAGTTTATCGAGGCAACCAAGGAG
ctcttacaacatacacatcaatgacctccttcttaacatttgtctatctcatcagGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAATTTGATGGTATCCTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAAAG
tcttaac putative branch site (score: 2)
tctatctc putative PPT
ttaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactatatgtccgaccctaatcagtactcttacaacatacacatcaatgacctccttcttaacatttgtctatctcatcagGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAATTTGATGGTATCCTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC