Sequence
atgc intronic sequence ATGC exonic sequencegtaaaacatctacctcttttcaacaccgaggatttgaatttagtgtaacctatgatatatgtctctgtttactgattcatagtcttgcttccataagtttgctcttatattacctttctttgtagCCGGAATTGTTATCGAGGCAAAAAACTGGCCTACCTTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATTCTGGTTCGTCTCCAAAGGCTACAGTA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G11180.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G11180.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G174730_T01 (Zea mays), 3'ss of exon 4
gtaaaacatctacctcttttcaacaccgaggatttgaatttagtgtaacctatgatatatgtctctgtttactgattcatagtcttgcttccataagtttgctcttatattacctttctttgtagCCGGAATTGTTATCGAGGCAAAAAACTGGCCTACCTTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATTCTGGTTCGTCTCCAAAGGCTACAGTA
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----------------catagagggttggataccctaaccctaaacaccctg-aagaaatatgggttgttatatatttttagtttt---tccactaacct-ttgtcat----cttttattttcagCTGGCGTTGTGATAGAAGAGAAAAACTGGCCTCCCTTTTTCCCCCTCATCCACCACGACATTTCCAATGAAATACCTATCCATCTACAAAGGATGCAGTA
upper sequence: AT1G11180.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G100809_T01 (Zea mays), 3'ss of exon 4
gtaaaacatctacctcttttcaacaccgaggatttgaatttagtgtaacctatgatatatgtctctgtttactgattcatagtcttgcttccataagtttgctcttatattacctttctttgtagCCGGAATTGTTATCGAGGCAAAAAACTGGCCTACCTTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATTCTGGTTCGTCTCCAAAGGCTACAGTA
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--------------------agaatcagttggattggtggtggtaaaacaccctgaagaaatctcggtt----gctatata-tttcgagcttgtgcactaacctttattatcttctatctttcagCTGGCATTGTGATAGAAGAGAAAAATTGGCCTCCCTTTTTCCCCCTCATCCACCATGACATTTCTAATGAGATACCTATCCATCTACAAAGGATGCAATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|301501643|gb|HO207183.1|HO207183EST: GATCTTAAACGAAAACAGGATGCTGCTGCCCGAG CCGGAATTGTTATCGAGGCAAAAAACTGGCCTACCTTCTTCCCCCTTATCC
genomic: GATCTTAAACGAAAACAGGATGCTGCTGCCCGAGgtaaaacatc ... ttctttgtagCCGGAATTGTTATCGAGGCAAAAAACTGGCCTACCTTCTTCCCCCTTATCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgattcatagtcttgcttccataagtttgctcttatattacctttctttgtagCCGGAATTGTTATCGAGGCAAAAAACTGGCCTACCTTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATTCTGGTTCGTCTCCAAAGGCTACAGTA
tactgat putative branch site (score: 2)
tattacctttcttt putative PPT
tcttatatta TA-rich tract