Sequence
atgc intronic sequence ATGC exonic sequencegtatatctctctcttctagctccctccatgtttagtgatctgtttatctactttgtcttgacttactataacgaggttatgcatattttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G10600.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G10600.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA01G03710.1 (Glycine max), 3'ss of exon 7
-----gtatatctc---tctcttctagctccctccatgtttagtgatctgtttatctactttgtcttgacttactataacgaggttatgcatatt--ttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAG
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gatcactatagccaaaattacttttaaaacc-taaatctctataaaagacaatatcctcctggt-ttgactt-ctctaacccttctcttctaaataattttagACACATCCTTCTCAAAGTTGTTTCATGTCATCGGTGGATCTGCACACTCAATATTCCTACCAG
upper sequence: AT1G10600.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv01s0127g00710.t01 (Vitis vinifera), 3'ss of exon 6
----gtatatct-ctctcttc-tagctccctccatgtttagt---gatctgtttatctactttgtcttgacttactataacgaggttatgcatattttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAG
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ggaagcatttcttctttgttcataaagattatctggtctggtcttgatgaaatt-tttagtaggtctttgtttgactcttcactcctatatctattttc-agACACATCCTTCTCAGAGTTGTTTCATGTCATCAATAGATTTGCACACGCAATACTCATATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164193487|gb|ES133766.1|ES133766EST: TG-TTTCCATTCAAAACGAAAGAGAACTCTATCCCGTAGGATGGATTCAT ACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGAT
genomic: TGTTTTCCATTCAAAACGAAAGAGAACTCTATCCCGTAGGATGGATTCATgtatatctct ... tattttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgtttatctactttgtcttgacttactataacgaggttatgcatattttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAG
tattttcc CT-rich tract
ttactataa TA-rich tract