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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctctctcttctagctccctccatgtttagtgatctgtttatctactttgtcttgacttactataacgaggttatgcatattttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAG

Basic information

species Arabidopsis thaliana
transcript AT1G10600.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10600.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA01G03710.1 (Glycine max), 3'ss of exon 7
-----gtatatctc---tctcttctagctccctccatgtttagtgatctgtttatctactttgtcttgacttactataacgaggttatgcatatt--ttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAG
      |||| |     |  ||| ||   || |  || | ||   |      ||||  | | || ||||||| || ||||     | | |  | |  ||  |||| |||||||||||  |||||||||||||||| || |||||||| || || ||||| || |||
gatcactatagccaaaattacttttaaaacc-taaatctctataaaagacaatatcctcctggt-ttgactt-ctctaacccttctcttctaaataattttagACACATCCTTCTCAAAGTTGTTTCATGTCATCGGTGGATCTGCACACTCAATATTCCTACCAG

upper sequence: AT1G10600.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv01s0127g00710.t01 (Vitis vinifera), 3'ss of exon 6
----gtatatct-ctctcttc-tagctccctccatgtttagt---gatctgtttatctactttgtcttgacttactataacgaggttatgcatattttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAG
    | || ||| || | ||| ||        |  || | ||   |||    || | || |  |||||   ||       |     |||   ||||||| |||| |||||||||||| ||||||||||||||||  ||||| |||| || || || || ||||||
ggaagcatttcttctttgttcataaagattatctggtctggtcttgatgaaatt-tttagtaggtctttgtttgactcttcactcctatatctattttc-agACACATCCTTCTCAGAGTTGTTTCATGTCATCAATAGATTTGCACACGCAATACTCATATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164193487|gb|ES133766.1|ES133766
EST:     TG-TTTCCATTCAAAACGAAAGAGAACTCTATCCCGTAGGATGGATTCAT                         ACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGAT
genomic: TGTTTTCCATTCAAAACGAAAGAGAACTCTATCCCGTAGGATGGATTCATgtatatctct ... tattttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtttatctactttgtcttgacttactataacgaggttatgcatattttccagACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAG
                                             tattttcc  CT-rich tract
                        ttactataa  TA-rich tract