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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggatggttatggataattgtatgtgttagttggtaatgtagtttatctaactgtttctcatatagattttttttggattggcagACAGTCAGTTACATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCATGGTTTTCCAA

Basic information

species Arabidopsis thaliana
transcript AT1G09840.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124929686|gb|EL007209.1|EL007209
EST:     CGAAATGGTCAATCAAGACAG                         ACAGTCAGTTACATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCATA
genomic: CGAAATGGTCAATCAAGACAGgttggatggt ... ggattggcagACAGTCAGTTACATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCAT-






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtaatgtagtttatctaactgtttctcatatagattttttttggattggcagACAGTCAGTTACATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCATGGTTTTCCAA
               atctaac  putative branch site (score: 2)
                                     ttttttttg  putative PPT
                        tttctcatatagattt  TA-rich tract