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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcattcataactttctcctttaattgtctctcagtgtctagtttgattgcttgttgtcgtttgggtttaatggatctgttgatatctcaatacagTAAGCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAATAT

Basic information

species Arabidopsis thaliana
transcript AT1G09640.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057552|gb|DR353309.1|DR353309
EST:     TGAGACTCCCGAGGGTTCAGTATTTGAAAGCAACGCAATTGCCCGTTATG                         TAAGCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAAT
genomic: TGAGACTCCCGAGGGTTCAGTATTTGAAAGCAACGCAATTGCCCGTTATGgtaaagcatt ... ctcaatacagTAAGCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAAT
EST: gi|124765194|gb|EH855324.1|EH855324
EST:     TGAGACTCCCGAGGGTTCAGTATTTGAAAGCAACGCAATTGCCCGTTATG                         TAAGCCGATTGAATGGTAGACAACTCTTTGAACGG
genomic: TGAGACTCCCGAGGGTTCAGTATTTGAAAGCAACGCAATTGCCCGTTATGgtaaagcatt ... ctcaatacagTAAGCCGATTGAATGGT-GACAACTCTTTGAACGG
EST: gi|47829190|gb|CK118874.1|CK118874
EST:     TGAGACTCCCGAGGGTTCAGTATTTGAAAGCAACGCAATTGCCCGTTATG                         TAAGCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAAT
genomic: TGAGACTCCCGAGGGTTCAGTATTTGAAAGCAACGCAATTGCCCGTTATGgtaaagcatt ... ctcaatacagTAAGCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgattgcttgttgtcgtttgggtttaatggatctgttgatatctcaatacagTAAGCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAATAT
                                    tgttgat  putative branch site (score: 4)
                         tttaat  TA-rich tract