Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtaaattaacaaactcatattcattgttttgttttctgaattttcttttacccactatctatgtcttacagtattcctgactatatttctcgtgcagCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTGTATCCGTGACGGGCCATACATGCCAACACTGCGGCTTCTTCATCAAT

Basic information

species Arabidopsis thaliana
transcript AT1G09150.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478254|gb|EG520846.1|EG520846
EST:     GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTG                         CCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTG
genomic: GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTGgtctgtaaat ... tctcgtgcagCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTG
EST: gi|124848853|gb|EH933290.1|EH933290
EST:     GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTG                         CCCAAAACCAT
genomic: GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTGgtctgtaaat ... tctcgtgcagCCCAAA-CCAT
EST: gi|86061003|gb|DR356760.1|DR356760
EST:     GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTG                         CCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTG
genomic: GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTGgtctgtaaat ... tctcgtgcagCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTG
EST: gi|86061005|gb|DR356762.1|DR356762
EST:     GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTG                         CCCAANCCATCTGACCCTAGTTGGTGTCAACAATGTCCCCCTCTTCTTCTG
genomic: GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTGgtctgtaaat ... tctcgtgcagCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTG
EST: gi|86061004|gb|DR356761.1|DR356761
EST:     GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTG                         CCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTG
genomic: GTGATGGAGGATCTACTTCCCAAAAAGATTCCTCTTATCGTAGTGAAGTGgtctgtaaat ... tctcgtgcagCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttacccactatctatgtcttacagtattcctgactatatttctcgtgcagCCCAAACCATCTGACCCTAGTTGTTGTCAACAATGTCCCCCTCTTCTTCTGTATCCGTGACGGGCCATACATGCCAACACTGCGGCTTCTTCATCAAT
                                tcctgac  putative branch site (score: 2)
                                         tatttctc  putative PPT
                                     actatattt  TA-rich tract