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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttaaaatatgagttatcagcttgtgaaatgcaaacatgtaagtaataagttttgctagagattgcacaagctacttgatctgttaccgagataaacactttttcgtctccacggtatttttcatgtgagcatgttggttcttatttgtgcagGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTTTCTGCGGGAACCAAGGGTAAACGGTTTATGATGCCACATGCCAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G09130.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09130.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv14s0060g02160.t01 (Vitis vinifera), 3'ss of exon 4
gtaatgttaaaatatgagttatcagcttgtgaaatgcaaacatgtaagtaataagttttgctagagattgcacaagctacttgatctgttaccgagataaacactttttcgtctccacggtatttttcatgtgagcatgttggttcttatttgtgcagGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTTTCTGCGGGAACCAAGGGTAAACGGTTTATGATGCCACATGCCAAAG
                                              | |    ||||    ||||   || |  ||   ||     |||||  |  || || ||  | |  |      ||  || ||        ||||   ||| ||   | || || ||||||||||    || ||||| || ||||| ||||| |||||  | ||  |||| ||||||||||||||||||||||||||||| ||||||||||
----------------------------------------------attttctagttcctttagaa--tgaagcagtctctca--ttgttagagt-atgaatacaatctatttattttggccttctt-------acatggatgttattgcatctgtagATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTCGCTGCAGGAACCAAGGGTAAACGGTTTATGATGCCGCATGCCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125223696|gb|EL237781.1|EL237781
EST:     GAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAG                         GTACATACAGTATGTGTGGGAGCAG
genomic: GAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAGgtaatgttaa ... atttgtgcagGTACATACAGTATGTGTGGGAGCAG
EST: gi|86066846|gb|DR362603.1|DR362603
EST:     AATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAG                         GTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTT
genomic: AATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAGgtaatgttaa ... atttgtgcagGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttcgtctccacggtatttttcatgtgagcatgttggttcttatttgtgcagGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTTTCTGCGGGAACCAAGGGTAAACGGTTTATGATGCCACATGCCAAAG
                                        ttcttattt  CT-rich tract
                 tatttttcat  TA-rich tract