1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cagttacttgttggcaaatataatgttcttgtatatttgtatgaacttgaaattactcttactcgttgtatctctgcctaatggttccttggcatgacagAATACTCAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCATCTTCAAAGAG
species | Arabidopsis thaliana |
transcript | AT1G08370.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCAACTCTTT-CAACAG AATACTCAGTGCATATTCCEST: gi|125281547|gb|EL295632.1|EL295632
genomic: TGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCAACTCTTTTCAACAGgtatgtatat ... ggcatgacagAATACTCAGTGCATATTCC
EST: GTGAATGCGAGGAGGTAGCAACTCTTTTCAACAG AATACTCAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCATCTTCEST: gi|164120704|gb|ES036182.1|ES036182
genomic: GTGAATGCGAGGAGGTAGCAACTCTTTTCAACAGgtatgtatat ... ggcatgacagAATACTCAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCATCTTC
EST: TGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCAACTCTTTTCAACAG AATACTCAGTGCATATTCCEST: gi|152036002|gb|AU237449.2|AU237449
genomic: TGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCAACTCTTTTCAACAGgtatgtatat ... ggcatgacagAATACTCAGTGCATATTCC
EST: TGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCAACTCTTTTCAACAG AATACTCAGTGCATATTCCAAGGGTAACCAGAAGCCAAAGGCCTCATCTTC
genomic: TGGTTCTACAATAAACGTGAATGCGAGGAGGTAGCAACTCTTTTCAACAGgtatgtatat ... ggcatgacagAATACTCAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCATCTTC
cttgaaattactcttactcgttgtatctctgcctaatggttccttggcatgacagAATACTCAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCATCTTCAAAGAG
gcctaat putative branch site (score: 3)
ttccttg putative PPT
aattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttacttgttggcaaatataatgttcttgtatatttgtatgaacttgaaattactcttactcgttgtatctctgcctaatggttccttggcatgacagAATACTCAGTGCATATTCCAAGGTTAACCAGAAGCCAAAGGCCTCATCTTCAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - -gcaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctgc