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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcactcctagttttcttcagtttgttgtgattgatcagctttggcatgattatatatctctaccttacagGAAAAGCTACGGGAAAGAAATGTTTTCGATACTCTAAGGGACGATTTTATGGTTTGTTTCGGGCAATGGGACTTCGAACCCGCGGATCTAAGCATCAGTA

Basic information

species Arabidopsis thaliana
transcript AT1G08310.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085169|gb|DR380928.1|DR380928
EST:     ACGACATAGAAGTGCTCAAGCGAAAAACTGGTTTTCCCATGCTTACTAAG                         GAAAAGCTACGGGAAAGAAATGTTTTCGATACTCTAAGGGACGATTTTATG
genomic: ACGACATAGAAGTGCTCAAGCGAAAAACTGGTTTTCCCATGCTTACTAAGgtcactccta ... taccttacagGAAAAGCTACGGGAAAGAAATGTTTTCGATACTCTAAGGGACGATTTTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagtttgttgtgattgatcagctttggcatgattatatatctctaccttacagGAAAAGCTACGGGAAAGAAATGTTTTCGATACTCTAAGGGACGATTTTATGGTTTGTTTCGGGCAATGGGACTTCGAACCCGCGGATCTAAGCATCAGTA
             gattgat  putative branch site (score: 4)
                                         tctctacctt  putative PPT
                              atgattatatatct  TA-rich tract