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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctgcttacagatcataaatatcgttcattttcggcattcacatcaaggtgttgaaaattgaattattatgtatgtatcatagagtaagtaagtttgtgtagtgatctaattttctttacgaaaacatgatcatcatcagGTGGAAGTGGTTGACACTGTTGGATGTGGAGACAGTTTTGTGGCTGCAATTGCATTAGGTTATATACGCAACATGCCGCTTGTTAATACCTTAACAATTG

Basic information

species Arabidopsis thaliana
transcript AT1G06730.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06730.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA13G18080.1 (Glycine max), 3'ss of exon 4
gtacctgcttacagatcataaatatcgttcattttcggcattcacatcaaggtgttgaaaattgaattattatgtatgtatcatagagtaagtaagtttgtgtagtgatctaattttctttacgaaaacatgatcatcatcagGTGGAAGTGGTTGACACTGTTGGATGTGGAGACAGTTTTGTGGCTGCAATTGCATTAGGTTATATACGCAACATGCCGCTTGTTAATACCTTAACAATTG
                                 |   ||| | | ||  |        |  |   |  | | |||   | | | |   | | |   ||| |||  | | ||||||   |||   |||         | |||||||| | ||  ||||||||||||||||||||||||||||||| ||||| ||||  |  |||| |||||  || ||||| || |||||||| ||  ||||||
---------------------------------tctcgcaataatatttactgaacttatgtctgacaactgtgtcctt-tgacaacattaatc--tttttgtgataaactaattcaatttctaaaa-------tgttatcagGTGAATGTTATTGACACTGTTGGATGTGGAGACAGTTTTGTTGCTGCTATTGTCTATGGTTTTATACATAATATGCCACTGGTTAATACATTGGCAATTG

upper sequence: AT1G06730.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G03920.1 (Glycine max), 3'ss of exon 4
gtacctgcttacagatcataaatatcgttcattttcggcattcacatcaaggtgttgaaaattgaattattatgtatgtatcatagagtaagtaagtttgtgtagtgatctaattttctttacgaaaacatgatcatcatcagGTGGAAGTGGTTGACACTGTTGGATGTGGAGACAGTTTTGTGGCTGCAATTGCATTAGGTTATATACGCAACATGCCGCTTGTTAATACCTTAACAATTG
                                      || | | ||  |        |  |   | |||| | |   | | | |   |   |   ||| |||  ||| ||||||   |||   |||         | |||||||| | ||  ||||| |||| |||||||||||||||||||| ||||| ||||  |  |||| |||||  || ||||| || |||||||| ||  ||||||
----------------------------------ctcacaataatatttattgaacttatgtctgactatttttttcctttgacaagattcatc--tttttgtgatgaactaattggatttctaaaa-------tgttatcagGTGAATGTTATTGACTCTGTCGGATGTGGAGACAGTTTTGTAGCTGCTATTGTCTATGGTTTTATACATAATATGCCACTGGTTAATACATTGGCAATTG

upper sequence: AT1G06730.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv07s0141g00830.t01 (Vitis vinifera), 3'ss of exon 4
gtacctgcttacagatcataaatatcgttcattttcggcattcacatcaaggtgttgaaaattgaattattatgtatgtatcatagagtaagtaagtttgtgtagtgatctaattttctttacgaaaacatgatcatcatcagGTGGAAGTGGTTGACACTGTTGGATGTGGAGACAGTTTTGTGGCTGCAATTGCATTAGGTTATATACGCAACATGCCGCTTGTTAATACCTTAACAATTG
                 |||||   | ||| | ||   | | | ||      || |  | | |  || ||  |  |    | ||  | || | ||  ||  ||| |  ||| ||                  |||   | |||||| | ||  |||||||||||||||| || || |||||||| ||||| |||||||| |||| ||| | |||| | ||    ||||| || ||| ||||||
----------------aataaagcgctttcttgtttaacttactca------tgattcatactccatcatctttcac---ttatgaaatatgaaatcttaagtaatattctgat------------------atctgtaacagGTGAATGTCATTGACACTGTTGGATGCGGGGATAGTTTTGTAGCTGCCATTGCATTTGGTTTTATCCACAACCTTCCTACAGTTAACACATTAGCAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtaagtttgtgtagtgatctaattttctttacgaaaacatgatcatcatcagGTGGAAGTGGTTGACACTGTTGGATGTGGAGACAGTTTTGTGGCTGCAATTGCATTAGGTTATATACGCAACATGCCGCTTGTTAATACCTTAACAATTG
                   atctaat  putative branch site (score: 3)
                   atctaattttcttta  TA-rich tract