Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatatcttacatcctgggcaggtctttcattgtcttaatcttttagagagacctcagtgcattacttaaggacaggattaaaggttatatagtatttaatttgtccactagttccatcatcactcttttgttaatgtagGATACGGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTTCTCCGGTGAATCATCGTTTGCGCGTTCTAATCAG

Basic information

species Arabidopsis thaliana
transcript AT1G04830.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04830.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 3'ss of exon 4
gtactatatcttacatcctgggcaggtctttcattgtcttaatcttttagagagacctcagtgcattacttaaggacaggattaaaggttatatagtatttaatttgtccactagttccatcatcactcttttgttaatgt-agGATACGGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTTCTCCGGTGAATCATCGTTTGCGCGTTCTAATCAG
                                     |  | |  ||||          | || | ||   |  |  |  |  | | | ||||| ||   | ||  ||    |   |   | || ||  |||    | | | |||| || |||| |||||| ||||| ||| ||||||||||||| || |||||||||||   ||| ||||| || ||  |  | | |||     | ||||||
-------------------------------------cccatttctttatg------ctattggactataaattggtattaggagatgatatatggtcactgatg-gtgttttgaattatttattacaatttgaacatttttagGACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatagtatttaatttgtccactagttccatcatcactcttttgttaatgtagGATACGGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTTCTCCGGTGAATCATCGTTTGCGCGTTCTAATCAG
                                            tgttaat  putative branch site (score: 3)
                                      ctcttttgtt  CT-rich tract
     tagtatttaatttgt  TA-rich tract