Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatggatctctattctttttcttaggcttcacttgtatgattaaagaatgtaatccgtttctttttgctattctgctttacttccagGTTCATGCTTATATCAAGACCCCACAGAGAACCAGGATTGCTCTATACATTA

Basic information

species Arabidopsis thaliana
transcript AT1G03980.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03980.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA03G32200.1 (Glycine max), 3'ss of exon 5
------------gtacatggat-ctctattctttttcttaggcttcacttgtatgattaaagaatgtaatccgtttctttttgctattctgctttacttccagGTTCATGCTTATATCAAGACCCCACAGAGAACCAGGATTGCTCTATACATTA
             || |    | |||| |   | |   |    ||   || | |  ||| | | | |||    |||  |    || || | |  |  ||  |||||||||||| ||||||| || ||||| ||||| |||||||| |||||  | 
gcaataagagaactaaacactttctctctctctctctctcttttttttttttctttttacatagtttaagtgatttgctca-acttttttaccctcttt--agGTTCATGCTTGTATCAAGGCCTCACAGGGAACCTGGATTGCTTTATACTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtatgattaaagaatgtaatccgtttctttttgctattctgctttacttccagGTTCATGCTTATATCAAGACCCCACAGAGAACCAGGATTGCTCTATACATTA
                         tttctttttgctattc  CT-rich tract
       attaaagaatgtaat  TA-rich tract