1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagtttgcattgcaaatcctttctaatatatgtataacagattattgattgatactgaggatgtggttttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAACAATAACTCGTCTTCGTTTGAGAATCAGCTTTCTAAAGAAGCAAGTGATG
species | Arabidopsis thaliana |
transcript | AT1G03630.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGAAGAGGAAGCTGGCAAAAGACTAGCACAG GTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAACEST: gi|86075474|gb|DR371231.1|DR371231
genomic: TCTGAAGAGGAAGCTGGCAAAAGACTAGCACAGgtcagtttgc ... tttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAAC
EST: TCACCAAAGGTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAG GTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAACEST: gi|124734232|gb|EH825634.1|EH825634
genomic: TCACCAAAGGTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAGgtcagtttgc ... tttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAAC
EST: TCACCAAAGGTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAG GTTGTGAGTGACCCTAGTCTTGGGAAGTCAGEST: gi|124851037|gb|EH935474.1|EH935474
genomic: TCACCAAAGGTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAGgtcagtttgc ... tttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCAG
EST: CACCAAAGGTTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAG GTTGTGAGTGACC-TAGTCTTGGGAAGTCAGGAGEST: gi|125291934|gb|EL306019.1|EL306019
genomic: CACCAAAGG-TTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAGgtcagtttgc ... tttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAG
EST: GTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAG GTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAACEST: gi|125286209|gb|EL300294.1|EL300294
genomic: GTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAGgtcagtttgc ... tttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAAC
EST: TCACCAAAGGTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAG GTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAAEST: gi|125038838|gb|EL111107.1|EL111107
genomic: TCACCAAAGGTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAGgtcagtttgc ... tttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAA
EST: TCACCAAAGGTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAG GTTGTGAGTGACCCTAGTCTTGGGAAGTCA
genomic: TCACCAAAGGTTACGTATCTGAAGAGGAAGCTGGCAAAAGACTAGCACAGgtcagtttgc ... tttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCA
ctaatatatgtataacagattattgattgatactgaggatgtggttttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAACAATAACTCGTCTTCGTTTGAGAATCAGCTTTCTAAAGAAGCAAGTGATG
ttttgtttt CT-rich tract
tataacagattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttgcattgcaaatcctttctaatatatgtataacagattattgattgatactgaggatgtggttttgttttagGTTGTGAGTGACCCTAGTCTTGGGAAGTCAGGAGTGTATTGGAGTTGGAACAATAACTCGTCTTCGTTTGAGAATCAGCTTTCTAAAGAAGCAAGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG